To import an entire folder and all its subfolders and files into Geneious Prime in one step, click the Add button and choose Import Folder, or go to File → Import → Folder. If the folder has subfolders, the folder structure will be retained when it is imported into Geneious.
#SNAPGENE VIEWER MAKE PLASMID ZIP#
In version 10.1 and above zip files containing multiple files and subfolders can also be imported. In version 11.1 onwards, Geneious supports bulk import of a mixture of SAM, BAM, GFF, BED, VCF and Fasta formatted files, allowing sequence, annotation and assembly information to be imported in a single step. Any combination of these files can be selected and then dragged and dropped into Geneious. The reference sequence will be loaded first, followed by the annotation and assembly files. Sequence IDs in the files must match for the import to proceed correctly. PHYLIP, PAUP*, Figtree, other tree building programs Geneious Prime version can import the following file formats: Format If no reference sequence is present in the imported documents, you will be prompted to select a reference from existing documents in your database, or load onto a blank sequence.
The BED format contains sequence annotation information. You can use a BED file to annotate existing sequences in your local database, import entirely new sequences, or import the annotations onto blank sequences. Geneious can import annotated sequences files in the standard Clone Manager molecule format. This will import name, description, topology, sequence and annotations. Currently it does not import other fields, restriction cut sites or primer binding sites. pd4 are not currently supported for import. The Clustal format is used by the well known multiple sequence alignment programs ClustalW, ClustalX and Clustal Omega. HQ625568 MRVRGTQRNWPQWWIWTSLGFWIILMCR-GNLWVTVYYGVPVWTDAKTTLFCASDAKAY HQ625588 MRVMGKWRNCQQWWIWGILGFWIILICN-AEQLWVTVYYGVPVWKEAKTTLFCASDAKAY HQ625572 MRVKGILKNYQQWWIWVILGFWMLMICNVVGNQWVTVYYGVPVWREAKATLFCASDAKAY HQ625589 MRVKGRSRNYPQWWVWGILGFWMFMICNGVGNRWVTVYYGVPVWKEAKATLFCASDAKAY HQ625570 MRVMGMWRNYPQWWIWGILGLWM-ICSVVGKLWVTVYYGVPVWTDAKATLFCASDAKAY An example Clustal file: CLUSTAL W (1.74) multiple sequence alignment Ĭlustal format files are used to store multiple sequence alignments and contain the word clustal at the beginning. HQ625581 MRVMGIPRNWPQWWIWGILGFWIMLMCRVEENSWVTVYYGVPVWKEATTTLFCASDAKAYĪBI. CSV/TSV (Comma/Tab Separated Values) and Excel spreadsheet files csfasta files represent the color calls generated by the SOLiD sequencing system. Sequences, primers and metadata information stored in spreadsheets can be uploaded to Geneious from either. For files containing sequences, including nucleotides, proteins, primers or probes, Geneious will create a new document containing the sequence and any additional fields chosen for import.
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